Results for RAREFAN run pgfmaxx5
Parameters
reference_strain: Smalt_FDAARGOS_649.fas
nmer_length: 21
min_nmer_occurrence: 55
query_rayt: yafM_SBW25
distance_group_seeds: 15
distance_repin_rayt:
analyse_repins: y
e_value_cutoff: 1e-30
Status:
complete
| Stage |
Status |
Return code |
|
rarefan
|
complete
|
|
|
tree
|
complete
|
|
|
zip
|
complete
|
|
RAYTs
RAREFAN discovered 138 RAYTs across all submitted genomes using tblastn with
yafM_SBW25 at an e-value threshold of 1e-30.
Seed sequences
RAREFAN identified 37 21bp long sequences in the reference genome that
occur more frequently than 55 times.
REP/REPIN counts
RAREFAN detected 147 REPs/REPINs in the reference genome.