mko71vtk is a rerun of t5dvaibm.
Stage | Status | Return code |
---|---|---|
rarefan | complete | |
tree | complete | |
rayt alignment | complete | |
rayt phylogeny | complete | |
zip | complete |
RAREFAN discovered 33 RAYTs across all submitted genomes using tblastn with yafM_SBW25.faa at an e-value threshold of 1e-30.
RAREFAN identified 59 21bp long sequences in the reference genome that occur more frequently than 55 times.
Group | 0 | 1 | 2 | 3 | 4 | 5 | |
---|---|---|---|---|---|---|---|
Strain | |||||||
chl17411 | REP/REPINs | 80 | 401 | 170 | 401 | 167 | 27 |
REPINs | 21 | 179 | 83 | 179 | 84 | 2 | |
chl17415 | REP/REPINs | 254 | 141 | 529 | 141 | 467 | 174 |
REPINs | 163 | 33 | 414 | 33 | 261 | 32 | |
chl17809 | REP/REPINs | 80 | 401 | 170 | 401 | 167 | 27 |
REPINs | 21 | 179 | 83 | 179 | 84 | 2 | |
chl189 | REP/REPINs | 222 | 129 | 393 | 129 | 392 | 145 |
REPINs | 153 | 35 | 223 | 35 | 223 | 25 | |
chl19603 | REP/REPINs | 53 | 243 | 326 | 243 | 326 | 95 |
REPINs | 19 | 82 | 183 | 82 | 182 | 15 | |
chl21509 | REP/REPINs | 54 | 439 | 180 | 439 | 179 | 46 |
REPINs | 9 | 262 | 94 | 262 | 92 | 7 | |
chl2210 | REP/REPINs | 62 | 254 | 332 | 254 | 332 | 95 |
REPINs | 21 | 91 | 187 | 91 | 186 | 11 | |
chl449 | REP/REPINs | 55 | 240 | 331 | 240 | 329 | 88 |
REPINs | 18 | 78 | 190 | 78 | 190 | 11 | |
chl464 | REP/REPINs | 55 | 240 | 331 | 240 | 329 | 88 |
REPINs | 18 | 78 | 190 | 78 | 190 | 11 | |
chl50083 | REP/REPINs | 73 | 271 | 324 | 271 | 324 | 106 |
REPINs | 29 | 116 | 189 | 116 | 188 | 24 | |
chl66 | REP/REPINs | 182 | 345 | 323 | 345 | 322 | 105 |
REPINs | 129 | 177 | 153 | 177 | 150 | 6 | |
chl6698 | REP/REPINs | 191 | 342 | 303 | 342 | 302 | 0 |
REPINs | 128 | 177 | 142 | 177 | 141 | 0 | |
chlB25 | REP/REPINs | 138 | 150 | 269 | 150 | 270 | 84 |
REPINs | 83 | 39 | 146 | 39 | 147 | 21 | |
chlC50 | REP/REPINs | 185 | 351 | 294 | 351 | 294 | 97 |
REPINs | 128 | 175 | 142 | 175 | 141 | 6 | |
chlCW2 | REP/REPINs | 49 | 240 | 316 | 240 | 315 | 80 |
REPINs | 19 | 88 | 190 | 88 | 190 | 14 | |
chlChPhzS135 | REP/REPINs | 77 | 398 | 169 | 398 | 167 | 29 |
REPINs | 21 | 177 | 86 | 177 | 84 | 3 | |
chlChPhzS140 | REP/REPINs | 77 | 389 | 175 | 389 | 175 | 0 |
REPINs | 24 | 177 | 90 | 177 | 89 | 0 | |
chlChPhzS23 | REP/REPINs | 180 | 342 | 309 | 342 | 308 | 103 |
REPINs | 127 | 158 | 143 | 158 | 143 | 8 | |
chlChPhzS24 | REP/REPINs | 190 | 338 | 321 | 338 | 320 | 118 |
REPINs | 130 | 155 | 140 | 155 | 140 | 8 | |
chlChPhzTR18 | REP/REPINs | 192 | 338 | 321 | 338 | 319 | 117 |
REPINs | 135 | 154 | 142 | 154 | 142 | 8 | |
chlChPhzTR36 | REP/REPINs | 186 | 328 | 308 | 328 | 308 | 113 |
REPINs | 131 | 157 | 146 | 157 | 144 | 10 | |
chlChPhzTR38 | REP/REPINs | 194 | 339 | 321 | 339 | 318 | 118 |
REPINs | 134 | 153 | 139 | 153 | 139 | 8 | |
chlChPhzTR39 | REP/REPINs | 189 | 337 | 323 | 337 | 320 | 118 |
REPINs | 132 | 151 | 139 | 151 | 139 | 8 | |
chlChPhzTR44 | REP/REPINs | 77 | 397 | 164 | 397 | 165 | 0 |
REPINs | 22 | 181 | 83 | 181 | 82 | 0 | |
chlDTR133 | REP/REPINs | 76 | 398 | 165 | 398 | 165 | 0 |
REPINs | 23 | 175 | 86 | 175 | 85 | 0 | |
chlJD37 | REP/REPINs | 86 | 210 | 326 | 210 | 325 | 102 |
REPINs | 36 | 69 | 180 | 69 | 180 | 11 | |
chlK27 | REP/REPINs | 88 | 247 | 410 | 247 | 410 | 132 |
REPINs | 49 | 88 | 211 | 88 | 212 | 18 | |
chlLzh-T5 | REP/REPINs | 185 | 346 | 332 | 346 | 332 | 110 |
REPINs | 130 | 174 | 147 | 174 | 146 | 6 | |
chlM12 | REP/REPINs | 50 | 233 | 357 | 233 | 357 | 114 |
REPINs | 17 | 76 | 195 | 76 | 196 | 15 | |
chlM71 | REP/REPINs | 66 | 262 | 396 | 262 | 396 | 126 |
REPINs | 30 | 85 | 204 | 85 | 205 | 12 | |
chlO6 | REP/REPINs | 188 | 325 | 322 | 325 | 321 | 122 |
REPINs | 126 | 159 | 144 | 159 | 142 | 9 | |
chlP2 | REP/REPINs | 168 | 345 | 306 | 345 | 307 | 0 |
REPINs | 119 | 173 | 141 | 173 | 140 | 0 | |
chlPA23 | REP/REPINs | 190 | 344 | 320 | 344 | 318 | 104 |
REPINs | 129 | 168 | 142 | 168 | 140 | 6 | |
chlPCL1391 | REP/REPINs | 79 | 386 | 175 | 386 | 173 | 0 |
REPINs | 25 | 174 | 91 | 174 | 90 | 0 | |
chlPCL1606 | REP/REPINs | 68 | 460 | 0 | 460 | 0 | 0 |
REPINs | 28 | 243 | 0 | 243 | 0 | 0 | |
chlPCL1607 | REP/REPINs | 75 | 384 | 171 | 384 | 172 | 0 |
REPINs | 22 | 175 | 90 | 175 | 88 | 0 | |
chlPb-St2 | REP/REPINs | 222 | 159 | 256 | 159 | 256 | 74 |
REPINs | 131 | 39 | 125 | 39 | 127 | 11 | |
chlQ16 | REP/REPINs | 59 | 245 | 338 | 245 | 338 | 99 |
REPINs | 22 | 81 | 187 | 81 | 187 | 12 | |
chlSLPH10 | REP/REPINs | 76 | 395 | 168 | 395 | 166 | 28 |
REPINs | 21 | 179 | 87 | 179 | 85 | 3 | |
chlStFRB508 | REP/REPINs | 89 | 250 | 358 | 250 | 358 | 111 |
REPINs | 36 | 99 | 199 | 99 | 200 | 14 | |
chlTAMOak81 | REP/REPINs | 392 | 293 | 241 | 293 | 242 | 98 |
REPINs | 255 | 179 | 109 | 179 | 108 | 15 | |
chlToZa7 | REP/REPINs | 77 | 393 | 173 | 393 | 174 | 0 |
REPINs | 22 | 173 | 88 | 173 | 87 | 0 | |
chlZJU60 | REP/REPINs | 70 | 401 | 172 | 401 | 168 | 29 |
REPINs | 19 | 192 | 85 | 192 | 86 | 4 | |
spMRSN12121 | REP/REPINs | 66 | 467 | 0 | 467 | 0 | 0 |
REPINs | 23 | 249 | 0 | 249 | 0 | 0 |