Results for RAREFAN run mknhxpv8


reference_strain: Smalt_AA1.fas
nmer_length: 21
min_nmer_occurrence: 55
query_rayt: yafM_SBW25
distance_group_seeds: 15
analyse_repins: y
e_value_cutoff: 1e-30

Status: complete

Stage Status Return code
rarefan complete
tree complete
zip complete


RAREFAN discovered 138 RAYTs across all submitted genomes using tblastn with yafM_SBW25 at an e-value threshold of 1e-30.

Seed sequences

RAREFAN identified 52 21bp long sequences in the reference genome that occur more frequently than 55 times.

REP/REPIN counts

RAREFAN detected 83 REPs/REPINs in the reference genome.

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