| Stage | Status | Return code |
|---|---|---|
| rarefan | complete | |
| tree | complete | |
| rayt alignment | complete | |
| rayt phylogeny | complete | |
| zip | complete |
RAREFAN discovered 293 RAYTs across all submitted genomes using tblastn with yafM_Ecoli at an e-value threshold of 1e-30.
RAREFAN identified 184 21bp long sequences in the reference genome that occur more frequently than 55 times.