Results for RAREFAN run f5ztr_t0


reference_strain: Nmen_2594.fas
nmer_length: 21
min_nmer_occurrence: 55
query_rayt: NMAA_0235.faa
distance_group_seeds: 15
analyse_repins: y
e_value_cutoff: 1e-30

f5ztr_t0 is a rerun of jptygu_d.

Status: complete

Stage Status Return code
rarefan complete
tree complete
rayt alignment complete
rayt phylogeny complete
zip complete


RAREFAN discovered 311 RAYTs across all submitted genomes using tblastn with NMAA_0235.faa at an e-value threshold of 1e-30.

Seed sequences

RAREFAN identified 184 21bp long sequences in the reference genome that occur more frequently than 55 times.

REP/REPIN counts

RAREFAN detected 48 REPs/REPINs in the reference genome.

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