Results for RAREFAN run auoms4wi


reference_strain: 4h-3-7-5.fas
nmer_length: 21
min_nmer_occurrence: 55
query_rayt: yafM_Ecoli.faa
analyse_repins: y
e_value_cutoff: 1e-30

Status: complete

Stage Status Return code
rarefan complete
tree complete
zip complete


RAREFAN discovered 0 RAYTs across all submitted genomes using tblastn with yafM_Ecoli.faa at an e-value threshold of 1e-30.

Seed sequences

RAREFAN identified 7 21bp long sequences in the reference genome that occur more frequently than 55 times.

REP/REPIN counts

RAREFAN detected 71 REPs/REPINs in the reference genome.

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