Results for RAREFAN run 706jylzg

Parameters

reference_strain: 4h-3-7-5.fas
nmer_length: 21
min_nmer_occurrence: 55
query_rayt: yafM_Ecoli.faa
distance_group_seeds: 15
distance_repin_rayt: 130
analyse_repins: y
e_value_cutoff: 1e-30

706jylzg is a rerun of auoms4wi.

Status: complete

Stage Status Return code
rarefan complete
tree complete
rayt alignment complete
rayt phylogeny complete
zip complete

RAYTs

RAREFAN discovered 0 RAYTs across all submitted genomes using tblastn with yafM_Ecoli.faa at an e-value threshold of 1e-30.


Seed sequences

RAREFAN identified 7 21bp long sequences in the reference genome that occur more frequently than 55 times.

REP/REPIN counts

Group 0
Strain
4h-3-7-5 REP/REPINs 952
REPINs 886
dokd-P16 REP/REPINs 1018
REPINs 947
dsw-1 REP/REPINs 953
REPINs 914
med134 REP/REPINs 977
REPINs 940


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