Results for RAREFAN run 1q497hyd

Parameters

reference_strain: CP000521_proteins.fasta
nmer_length: 21
min_nmer_occurrence: 55
query_rayt: yafM_Ecoli
distance_group_seeds: 15
distance_repin_rayt: 200
analyse_repins: y
e_value_cutoff: 1e-30

Status: complete

Stage Status Return code
rarefan complete
tree complete
rayt alignment complete
rayt phylogeny complete
zip complete

RAYTs

RAREFAN discovered 0 RAYTs across all submitted genomes using tblastn with yafM_Ecoli at an e-value threshold of 1e-30.


Seed sequences

RAREFAN identified 0 21bp long sequences in the reference genome that occur more frequently than 55 times.

REP/REPIN counts

Group Count


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