Genome name	Group number	most frequent sequence in group	frequency
Smalt_KMM349	1	ATCCACGCATGGCGTGGATCT	10
Smalt_KMM349	0	GTAGTGCCGGCCGCTGGCCGG	127
Smalt_W18	1	ATCCACGCATGGCGTGGATCT	16
Smalt_JV3	2	GGTGCCGACCGTTGGTCGGCA	549
Smalt_W18	2	GGTGCCGACCGTTGGTCGGCA	301
Smalt_JV3	3	TAATCCCCTCCGTCCCCTTTT	46
Smalt_W18	3	TAATCCCCTCCGTCCCCTTTT	37
Smalt_FDAARGOS_1044	4	GTCGACTAACAGTCGACTCTA	124
Smalt_JV3	0	GTAGTGCCGGCCGCTGGCCGG	413
Smalt_W18	4	GTCGACTAACAGTCGACTCTA	32
Smalt_JV3	1	ATCCACGCATGGCGTGGATCT	37
Smalt_FDAARGOS_1044	2	GGTGCCGACCGTTGGTCGGCA	10
Smalt_FDAARGOS_1044	3	TAATCCCCTCCGTCCCCTTTT	34
Smalt_FDAARGOS_1044	0	GTAGTGCCGGCCGCTGGCCGG	631
Smalt_JV3	4	GTCGACTAACAGTCGACTCTA	0
Smalt_FDAARGOS_1044	1	ATCCACGCATGGCGTGGATCT	29
Smalt_AB550	4	GTCGACTAACAGTCGACTCTA	0
Smalt_AB550	0	GTAGTGCCGGCCGCTGGCCGG	142
Smalt_KMM349	3	TAATCCCCTCCGTCCCCTTTT	40
Smalt_AB550	1	ATCCACGCATGGCGTGGATCT	9
Smalt_KMM349	2	GGTGCCGACCGTTGGTCGGCA	383
Smalt_AB550	2	GGTGCCGACCGTTGGTCGGCA	4
Smalt_AB550	3	TAATCCCCTCCGTCCCCTTTT	44
Smalt_KMM349	4	GTCGACTAACAGTCGACTCTA	14
Smalt_X28	4	GTCGACTAACAGTCGACTCTA	0
Smalt_X28	3	TAATCCCCTCCGTCCCCTTTT	49
Smalt_X28	2	GGTGCCGACCGTTGGTCGGCA	127
Smalt_X28	1	ATCCACGCATGGCGTGGATCT	41
Smalt_W18	0	GTAGTGCCGGCCGCTGGCCGG	196
Smalt_U5	1	ATCCACGCATGGCGTGGATCT	56
Smalt_U5	2	GGTGCCGACCGTTGGTCGGCA	5
Smalt_U5	0	GTAGTGCCGGCCGCTGGCCGG	100
Smalt_U5	3	TAATCCCCTCCGTCCCCTTTT	0
Smalt_U5	4	GTCGACTAACAGTCGACTCTA	0
Smalt_DHHJ	0	GTAGTGCCGGCCGCTGGCCGG	175
Smalt_Sm53	3	TAATCCCCTCCGTCCCCTTTT	36
Smalt_Sm53	4	GTCGACTAACAGTCGACTCTA	120
Smalt_Sm53	1	ATCCACGCATGGCGTGGATCT	25
Smalt_Sm53	2	GGTGCCGACCGTTGGTCGGCA	739
Smalt_Sm53	0	GTAGTGCCGGCCGCTGGCCGG	204
Smalt_AA1	1	ATCCACGCATGGCGTGGATCT	38
Smalt_AA1	0	GTAGTGCCGGCCGCTGGCCGG	87
Smalt_DHHJ	2	GGTGCCGACCGTTGGTCGGCA	525
Smalt_AA1	3	TAATCCCCTCCGTCCCCTTTT	0
Smalt_DHHJ	1	ATCCACGCATGGCGTGGATCT	39
Smalt_AA1	2	GGTGCCGACCGTTGGTCGGCA	44
Smalt_DHHJ	4	GTCGACTAACAGTCGACTCTA	0
Smalt_DHHJ	3	TAATCCCCTCCGTCCCCTTTT	40
Smalt_AA1	4	GTCGACTAACAGTCGACTCTA	18
Smalt_ISMMS2R	4	GTCGACTAACAGTCGACTCTA	0
Smalt_ISMMS2R	3	TAATCCCCTCCGTCCCCTTTT	25
Smalt_ISMMS2R	2	GGTGCCGACCGTTGGTCGGCA	119
Smalt_ISMMS2R	1	ATCCACGCATGGCGTGGATCT	201
Smalt_ISMMS2R	0	GTAGTGCCGGCCGCTGGCCGG	92
Smalt_OUC_Est10	1	ATCCACGCATGGCGTGGATCT	31
Smalt_SJTL3	1	ATCCACGCATGGCGTGGATCT	15
Smalt_OUC_Est10	0	GTAGTGCCGGCCGCTGGCCGG	104
Smalt_SJTL3	2	GGTGCCGACCGTTGGTCGGCA	495
Smalt_OUC_Est10	3	TAATCCCCTCCGTCCCCTTTT	26
Smalt_OUC_Est10	2	GGTGCCGACCGTTGGTCGGCA	1
Smalt_SJTL3	0	GTAGTGCCGGCCGCTGGCCGG	469
Smalt_OUC_Est10	4	GTCGACTAACAGTCGACTCTA	9
Smalt_SJTL3	3	TAATCCCCTCCGTCCCCTTTT	39
Smalt_SJTL3	4	GTCGACTAACAGTCGACTCTA	0
Smalt_PEG-390	4	GTCGACTAACAGTCGACTCTA	26
Smalt_PEG-390	1	ATCCACGCATGGCGTGGATCT	26
Smalt_PEG-390	0	GTAGTGCCGGCCGCTGGCCGG	75
Smalt_PEG-390	3	TAATCCCCTCCGTCCCCTTTT	20
Smalt_PEG-390	2	GGTGCCGACCGTTGGTCGGCA	7
Smalt_R551-3	2	GGTGCCGACCGTTGGTCGGCA	6
Smalt_R551-3	3	TAATCCCCTCCGTCCCCTTTT	42
Smalt_R551-3	4	GTCGACTAACAGTCGACTCTA	0
Smalt_SoD9b	2	GGTGCCGACCGTTGGTCGGCA	184
Smalt_SoD9b	3	TAATCCCCTCCGTCCCCTTTT	36
Smalt_R551-3	0	GTAGTGCCGGCCGCTGGCCGG	122
Smalt_SoD9b	4	GTCGACTAACAGTCGACTCTA	0
Smalt_R551-3	1	ATCCACGCATGGCGTGGATCT	11
Smalt_FDAARGOS_325	3	TAATCCCCTCCGTCCCCTTTT	34
Smalt_FDAARGOS_325	4	GTCGACTAACAGTCGACTCTA	128
Smalt_FDAARGOS_325	1	ATCCACGCATGGCGTGGATCT	21
Smalt_SoD9b	0	GTAGTGCCGGCCGCTGGCCGG	200
Smalt_FDAARGOS_325	2	GGTGCCGACCGTTGGTCGGCA	14
Smalt_SoD9b	1	ATCCACGCATGGCGTGGATCT	9
Smalt_FDAARGOS_649	4	GTCGACTAACAGTCGACTCTA	137
Smalt_FDAARGOS_325	0	GTAGTGCCGGCCGCTGGCCGG	184
Smalt_CSM2	3	TAATCCCCTCCGTCCCCTTTT	43
Smalt_CSM2	2	GGTGCCGACCGTTGGTCGGCA	408
Smalt_PEG-305	1	ATCCACGCATGGCGTGGATCT	165
Smalt_PEG-305	0	GTAGTGCCGGCCGCTGGCCGG	242
Smalt_CSM2	4	GTCGACTAACAGTCGACTCTA	0
Smalt_CSM2	1	ATCCACGCATGGCGTGGATCT	43
Smalt_CSM2	0	GTAGTGCCGGCCGCTGGCCGG	128
Smalt_FDAARGOS_649	1	ATCCACGCATGGCGTGGATCT	26
Smalt_FDAARGOS_649	0	GTAGTGCCGGCCGCTGGCCGG	212
Smalt_FDAARGOS_649	3	TAATCCCCTCCGTCCCCTTTT	34
Smalt_FDAARGOS_649	2	GGTGCCGACCGTTGGTCGGCA	634
Smalt_D457	0	GTAGTGCCGGCCGCTGGCCGG	116
Smalt_SM866	0	GTAGTGCCGGCCGCTGGCCGG	191
Smalt_D457	3	TAATCCCCTCCGTCCCCTTTT	46
Smalt_D457	4	GTCGACTAACAGTCGACTCTA	0
Smalt_D457	1	ATCCACGCATGGCGTGGATCT	7
Smalt_D457	2	GGTGCCGACCGTTGGTCGGCA	410
Smalt_CPBW01	4	GTCGACTAACAGTCGACTCTA	13
Smalt_PEG-173	0	GTAGTGCCGGCCGCTGGCCGG	117
Smalt_PEG-173	1	ATCCACGCATGGCGTGGATCT	221
Smalt_PEG-173	2	GGTGCCGACCGTTGGTCGGCA	368
Smalt_PEG-173	3	TAATCCCCTCCGTCCCCTTTT	33
Smalt_PEG-173	4	GTCGACTAACAGTCGACTCTA	96
Smalt_X28	0	GTAGTGCCGGCCGCTGGCCGG	116
Smalt_SM866	1	ATCCACGCATGGCGTGGATCT	38
Smalt_CPBW01	3	TAATCCCCTCCGTCCCCTTTT	26
Smalt_SM866	2	GGTGCCGACCGTTGGTCGGCA	580
Smalt_CPBW01	2	GGTGCCGACCGTTGGTCGGCA	116
Smalt_SM866	3	TAATCCCCTCCGTCCCCTTTT	40
Smalt_CPBW01	1	ATCCACGCATGGCGTGGATCT	185
Smalt_SM866	4	GTCGACTAACAGTCGACTCTA	0
Smalt_CPBW01	0	GTAGTGCCGGCCGCTGGCCGG	18
Smalt_T50-20	3	TAATCCCCTCCGTCCCCTTTT	41
Smalt_T50-20	4	GTCGACTAACAGTCGACTCTA	0
Smalt_NCTC13014	0	GTAGTGCCGGCCGCTGGCCGG	184
Smalt_NCTC13014	1	ATCCACGCATGGCGTGGATCT	16
Smalt_PEG-305	3	TAATCCCCTCCGTCCCCTTTT	40
Smalt_PEG-305	2	GGTGCCGACCGTTGGTCGGCA	0
Smalt_PEG-305	4	GTCGACTAACAGTCGACTCTA	269
Smalt_T50-20	0	GTAGTGCCGGCCGCTGGCCGG	157
Smalt_T50-20	1	ATCCACGCATGGCGTGGATCT	36
Smalt_T50-20	2	GGTGCCGACCGTTGGTCGGCA	519
Smalt_sm-RA9	4	GTCGACTAACAGTCGACTCTA	0
Smalt_sm-RA9	0	GTAGTGCCGGCCGCTGGCCGG	129
Smalt_NCTC13014	2	GGTGCCGACCGTTGGTCGGCA	284
Smalt_sm-RA9	1	ATCCACGCATGGCGTGGATCT	10
Smalt_NCTC13014	3	TAATCCCCTCCGTCCCCTTTT	43
Smalt_sm-RA9	2	GGTGCCGACCGTTGGTCGGCA	142
Smalt_NCTC13014	4	GTCGACTAACAGTCGACTCTA	35
Smalt_sm-RA9	3	TAATCCCCTCCGTCCCCTTTT	41
Smalt_ISMMS2	3	TAATCCCCTCCGTCCCCTTTT	25
Smalt_ISMMS2	2	GGTGCCGACCGTTGGTCGGCA	119
Smalt_ISMMS2	4	GTCGACTAACAGTCGACTCTA	0
Smalt_ISMMS2	1	ATCCACGCATGGCGTGGATCT	201
Smalt_ISMMS2	0	GTAGTGCCGGCCGCTGGCCGG	92
Smalt_PEG-68	3	TAATCCCCTCCGTCCCCTTTT	45
Smalt_PEG-68	2	GGTGCCGACCGTTGGTCGGCA	400
Smalt_PEG-68	4	GTCGACTAACAGTCGACTCTA	0
Smalt_NCTC10258	0	GTAGTGCCGGCCGCTGGCCGG	599
Smalt_NCTC10258	4	GTCGACTAACAGTCGACTCTA	118
Smalt_NCTC10258	3	TAATCCCCTCCGTCCCCTTTT	31
Smalt_NCTC10258	2	GGTGCCGACCGTTGGTCGGCA	636
Smalt_NCTC10258	1	ATCCACGCATGGCGTGGATCT	26
Smalt_FDAARGOS_507	4	GTCGACTAACAGTCGACTCTA	134
Smalt_FDAARGOS_507	3	TAATCCCCTCCGTCCCCTTTT	30
Smalt_NEB515	2	GGTGCCGACCGTTGGTCGGCA	759
Smalt_NEB515	1	ATCCACGCATGGCGTGGATCT	27
Smalt_NEB515	4	GTCGACTAACAGTCGACTCTA	114
Smalt_NEB515	3	TAATCCCCTCCGTCCCCTTTT	38
Smalt_FDAARGOS_507	0	GTAGTGCCGGCCGCTGGCCGG	181
Smalt_FDAARGOS_507	2	GGTGCCGACCGTTGGTCGGCA	200
Smalt_FDAARGOS_507	1	ATCCACGCATGGCGTGGATCT	28
Smalt_PEG-141	4	GTCGACTAACAGTCGACTCTA	0
Smalt_PEG-141	2	GGTGCCGACCGTTGGTCGGCA	181
Smalt_PEG-141	3	TAATCCCCTCCGTCCCCTTTT	40
Smalt_PEG-141	0	GTAGTGCCGGCCGCTGGCCGG	173
Smalt_NEB515	0	GTAGTGCCGGCCGCTGGCCGG	208
Smalt_PEG-141	1	ATCCACGCATGGCGTGGATCT	38
Smalt_ISMMS3	2	GGTGCCGACCGTTGGTCGGCA	3
Smalt_K279a	3	TAATCCCCTCCGTCCCCTTTT	34
Smalt_ISMMS3	1	ATCCACGCATGGCGTGGATCT	15
Smalt_K279a	4	GTCGACTAACAGTCGACTCTA	122
Smalt_ISMMS3	4	GTCGACTAACAGTCGACTCTA	0
Smalt_ISMMS3	3	TAATCCCCTCCGTCCCCTTTT	38
Smalt_K279a	0	GTAGTGCCGGCCGCTGGCCGG	635
Smalt_ISMMS3	0	GTAGTGCCGGCCGCTGGCCGG	141
Smalt_K279a	1	ATCCACGCATGGCGTGGATCT	25
Smalt_K279a	2	GGTGCCGACCGTTGGTCGGCA	86
Smalt_WP1-W18-CRE-01	4	GTCGACTAACAGTCGACTCTA	125
Smalt_WP1-W18-CRE-01	3	TAATCCCCTCCGTCCCCTTTT	34
Smalt_Col1	4	GTCGACTAACAGTCGACTCTA	0
Smalt_Col1	2	GGTGCCGACCGTTGGTCGGCA	123
Smalt_NCTC10259	4	GTCGACTAACAGTCGACTCTA	0
Smalt_Col1	3	TAATCCCCTCCGTCCCCTTTT	43
Smalt_Col1	0	GTAGTGCCGGCCGCTGGCCGG	95
Smalt_Col1	1	ATCCACGCATGGCGTGGATCT	189
Smalt_SKK55	4	GTCGACTAACAGTCGACTCTA	0
Smalt_SKK55	2	GGTGCCGACCGTTGGTCGGCA	91
Smalt_SKK55	3	TAATCCCCTCCGTCCCCTTTT	21
Smalt_FDAARGOS_92	1	ATCCACGCATGGCGTGGATCT	19
Smalt_SKK55	0	GTAGTGCCGGCCGCTGGCCGG	50
Smalt_FDAARGOS_92	0	GTAGTGCCGGCCGCTGGCCGG	191
Smalt_SKK55	1	ATCCACGCATGGCGTGGATCT	14
Smalt_NCTC10259	3	TAATCCCCTCCGTCCCCTTTT	47
Smalt_FDAARGOS_92	3	TAATCCCCTCCGTCCCCTTTT	32
Smalt_NCTC10259	2	GGTGCCGACCGTTGGTCGGCA	5
Smalt_FDAARGOS_92	2	GGTGCCGACCGTTGGTCGGCA	637
Smalt_NCTC10259	1	ATCCACGCATGGCGTGGATCT	8
Smalt_NCTC10259	0	GTAGTGCCGGCCGCTGGCCGG	101
Smalt_FDAARGOS_92	4	GTCGACTAACAGTCGACTCTA	84
Smalt_ICU331	0	GTAGTGCCGGCCGCTGGCCGG	190
Smalt_SJTH1	0	GTAGTGCCGGCCGCTGGCCGG	187
Smalt_SJTH1	1	ATCCACGCATGGCGTGGATCT	57
Smalt_ICU331	4	GTCGACTAACAGTCGACTCTA	101
Smalt_SJTH1	2	GGTGCCGACCGTTGGTCGGCA	263
Smalt_ICU331	3	TAATCCCCTCCGTCCCCTTTT	36
Smalt_SJTH1	3	TAATCCCCTCCGTCCCCTTTT	34
Smalt_ICU331	2	GGTGCCGACCGTTGGTCGGCA	616
Smalt_SJTH1	4	GTCGACTAACAGTCGACTCTA	0
Smalt_ICU331	1	ATCCACGCATGGCGTGGATCT	24
Smalt_PEG-68	1	ATCCACGCATGGCGTGGATCT	9
Smalt_PEG-68	0	GTAGTGCCGGCCGCTGGCCGG	112
Smalt_WP1-W18-CRE-01	0	GTAGTGCCGGCCGCTGGCCGG	205
Smalt_WP1-W18-CRE-01	2	GGTGCCGACCGTTGGTCGGCA	109
Smalt_WP1-W18-CRE-01	1	ATCCACGCATGGCGTGGATCT	22
Smalt_MER1	3	TAATCCCCTCCGTCCCCTTTT	0
Smalt_MER1	2	GGTGCCGACCGTTGGTCGGCA	3
Smalt_MER1	1	ATCCACGCATGGCGTGGATCT	372
Smalt_MER1	0	GTAGTGCCGGCCGCTGGCCGG	74
Smalt_MER1	4	GTCGACTAACAGTCGACTCTA	0
Smalt_PEG-42	0	GTAGTGCCGGCCGCTGGCCGG	187
Smalt_PEG-42	1	ATCCACGCATGGCGTGGATCT	16
Smalt_PEG-42	2	GGTGCCGACCGTTGGTCGGCA	96
Smalt_PEG-42	3	TAATCCCCTCCGTCCCCTTTT	37
Smalt_PEG-42	4	GTCGACTAACAGTCGACTCTA	37
Smalt_NCTC10498	0	GTAGTGCCGGCCGCTGGCCGG	226
Smalt_NCTC10498	2	GGTGCCGACCGTTGGTCGGCA	655
Smalt_NCTC10498	1	ATCCACGCATGGCGTGGATCT	29
Smalt_NCTC10498	4	GTCGACTAACAGTCGACTCTA	121
Smalt_NCTC10498	3	TAATCCCCTCCGTCCCCTTTT	33
Smalt_NCTC10257	1	ATCCACGCATGGCGTGGATCT	29
Smalt_NCTC10257	0	GTAGTGCCGGCCGCTGGCCGG	631
Smalt_NCTC10257	4	GTCGACTAACAGTCGACTCTA	124
Smalt_NCTC10257	3	TAATCCCCTCCGTCCCCTTTT	34
Smalt_NCTC10257	2	GGTGCCGACCGTTGGTCGGCA	10
Smalt_CF13	3	TAATCCCCTCCGTCCCCTTTT	33
Smalt_CF13	2	GGTGCCGACCGTTGGTCGGCA	670
Smalt_CF13	4	GTCGACTAACAGTCGACTCTA	131
Smalt_sm454	4	GTCGACTAACAGTCGACTCTA	142
Smalt_sm454	2	GGTGCCGACCGTTGGTCGGCA	11
Smalt_sm454	3	TAATCCCCTCCGTCCCCTTTT	31
Smalt_sm454	0	GTAGTGCCGGCCGCTGGCCGG	202
Smalt_sm454	1	ATCCACGCATGGCGTGGATCT	25
Smalt_CF13	1	ATCCACGCATGGCGTGGATCT	26
Smalt_CF13	0	GTAGTGCCGGCCGCTGGCCGG	171
Smalt_O1	4	GTCGACTAACAGTCGACTCTA	130
Smalt_O1	3	TAATCCCCTCCGTCCCCTTTT	26
Smalt_O1	2	GGTGCCGACCGTTGGTCGGCA	13
Smalt_O1	1	ATCCACGCATGGCGTGGATCT	22
Smalt_O1	0	GTAGTGCCGGCCGCTGGCCGG	220